Isobaric Tags for Relative and Absolute Quantitation (iTRAQ)-Based Comparative Proteome Analysis of the Response of Ramie under Drought Stress
Identifieur interne : 000155 ( Main/Exploration ); précédent : 000154; suivant : 000156Isobaric Tags for Relative and Absolute Quantitation (iTRAQ)-Based Comparative Proteome Analysis of the Response of Ramie under Drought Stress
Auteurs : Xia An [République populaire de Chine] ; Jingyu Zhang ; Lunjin Dai ; Gang Deng ; Yiwen Liao ; Lijun Liu ; Bo Wang ; Dingxiang PengSource :
- International Journal of Molecular Sciences [ 1422-0067 ] ; 2016.
Abstract
In this study, we conducted the first isobaric tags for relative and absolute quantitation (
Url:
DOI: 10.3390/ijms17101607
PubMed: 27689998
PubMed Central: 5085640
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Isobaric Tags for Relative and Absolute Quantitation (iTRAQ)-Based Comparative Proteome Analysis of the Response of Ramie under Drought Stress</title><author><name sortKey="An, Xia" sort="An, Xia" uniqKey="An X" first="Xia" last="An">Xia An</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation><affiliation wicri:level="1"><nlm:aff id="af2-ijms-17-01607">Flower Research and Development Centre, Zhejiang Academy of Agricultural Sciences, Hangzhou 311202, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Flower Research and Development Centre, Zhejiang Academy of Agricultural Sciences, Hangzhou 311202</wicri:regionArea><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName></affiliation></author><author><name sortKey="Zhang, Jingyu" sort="Zhang, Jingyu" uniqKey="Zhang J" first="Jingyu" last="Zhang">Jingyu Zhang</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation></author><author><name sortKey="Dai, Lunjin" sort="Dai, Lunjin" uniqKey="Dai L" first="Lunjin" last="Dai">Lunjin Dai</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation></author><author><name sortKey="Deng, Gang" sort="Deng, Gang" uniqKey="Deng G" first="Gang" last="Deng">Gang Deng</name><affiliation><nlm:aff id="af3-ijms-17-01607">School of Agricultural Science, Yunnan University, Kunming 650091, China;<email>denggang1986@ynu.edu.cn</email></nlm:aff></affiliation></author><author><name sortKey="Liao, Yiwen" sort="Liao, Yiwen" uniqKey="Liao Y" first="Yiwen" last="Liao">Yiwen Liao</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation></author><author><name sortKey="Liu, Lijun" sort="Liu, Lijun" uniqKey="Liu L" first="Lijun" last="Liu">Lijun Liu</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation></author><author><name sortKey="Wang, Bo" sort="Wang, Bo" uniqKey="Wang B" first="Bo" last="Wang">Bo Wang</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation></author><author><name sortKey="Peng, Dingxiang" sort="Peng, Dingxiang" uniqKey="Peng D" first="Dingxiang" last="Peng">Dingxiang Peng</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27689998</idno><idno type="pmc">5085640</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5085640</idno><idno type="RBID">PMC:5085640</idno><idno type="doi">10.3390/ijms17101607</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000F77</idno><idno type="wicri:Area/Pmc/Curation">000F76</idno><idno 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(X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation><affiliation wicri:level="1"><nlm:aff id="af2-ijms-17-01607">Flower Research and Development Centre, Zhejiang Academy of Agricultural Sciences, Hangzhou 311202, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Flower Research and Development Centre, Zhejiang Academy of Agricultural Sciences, Hangzhou 311202</wicri:regionArea><placeName><settlement type="city">Hangzhou</settlement><region type="province">Zhejiang</region></placeName></affiliation></author><author><name sortKey="Zhang, Jingyu" sort="Zhang, Jingyu" uniqKey="Zhang J" first="Jingyu" last="Zhang">Jingyu Zhang</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation></author><author><name sortKey="Dai, Lunjin" sort="Dai, Lunjin" uniqKey="Dai L" first="Lunjin" last="Dai">Lunjin Dai</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation></author><author><name sortKey="Deng, Gang" sort="Deng, Gang" uniqKey="Deng G" first="Gang" last="Deng">Gang Deng</name><affiliation><nlm:aff id="af3-ijms-17-01607">School of Agricultural Science, Yunnan University, Kunming 650091, China;<email>denggang1986@ynu.edu.cn</email></nlm:aff></affiliation></author><author><name sortKey="Liao, Yiwen" sort="Liao, Yiwen" uniqKey="Liao Y" first="Yiwen" last="Liao">Yiwen Liao</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation></author><author><name sortKey="Liu, Lijun" sort="Liu, Lijun" uniqKey="Liu L" first="Lijun" last="Liu">Lijun Liu</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation></author><author><name sortKey="Wang, Bo" sort="Wang, Bo" uniqKey="Wang B" first="Bo" last="Wang">Bo Wang</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation></author><author><name sortKey="Peng, Dingxiang" sort="Peng, Dingxiang" uniqKey="Peng D" first="Dingxiang" last="Peng">Dingxiang Peng</name><affiliation><nlm:aff id="af1-ijms-17-01607">Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China;<email>anxia@webmail.hzau.edu.cn</email> (X.A.);<email>zhangjingyu0408@gmail.com</email> (J.Z.);<email>dailunjin@gmail.com</email> (L.D.);<email>lywen0902@gmail.com</email> (Y.L.);<email>liulijun@mail.hzau.edu.cn</email> (L.L.)</nlm:aff></affiliation></author></analytic><series><title level="j">International Journal of Molecular Sciences</title><idno type="eISSN">1422-0067</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>In this study, we conducted the first isobaric tags for relative and absolute quantitation (<italic>isobaric tags for relative and absolute quantitation</italic> (iTRAQ))-based comparative proteomic analysis of ramie plantlets after 0 (minor drought stress), 24 (moderate drought stress), and 72 h (severe drought stress) of treatment with 15% (<italic>w</italic>/<italic>v</italic>) poly (ethylene glycol)6000 (PEG6000) to simulate drought stress. In our study, the association analysis of proteins and transcript expression revealed 1244 and 968 associated proteins identified in leaves and roots, respectively. L1, L2, and L3 are leaf samples which were harvested at 0, 24, and 72 h after being treated with 15% PEG6000, respectively. Among those treatment groups, a total of 118, 216, and 433 unique proteins were identified as differentially expressed during L1 vs. L2, L2 vs. L3, and L1 vs. L3, respectively. R1, R2, and R3 are root samples which were harvested at 0, 24, and 72 h after being treated with 15% PEG6000, respectively. Among those treatment groups，a total of 124, 27, and 240 unique proteins were identified as differentially expressed during R1 vs. R2, R2 vs. R3, and R1 vs. R3, respectively. Bioinformatics analysis indicated that glycolysis/gluconeogenesis was significantly upregulated in roots in response to drought stress. This enhancement may result in more glycolytically generated adenosine triphosphate (ATP) in roots to adapt to adverse environmental conditions. To obtain complementary information related to iTRAQ data, the mRNA levels of 12 proteins related to glycolysis/gluconeogenesis in leaves and 7 in roots were further analyzed by qPCR. Most of their expression levels were higher in R3 than R1 and R2, suggesting that these compounds may promote drought tolerance by modulating the production of available energy.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Mohammadi, P P" uniqKey="Mohammadi P">P.P. Mohammadi</name></author><author><name sortKey="Moieni, A" uniqKey="Moieni A">A. Moieni</name></author><author><name sortKey="Komatsu, S" uniqKey="Komatsu S">S. Komatsu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hu, H" uniqKey="Hu H">H. Hu</name></author><author><name sortKey="Dai, M" uniqKey="Dai M">M. 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Chen</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li></country><region><li>Zhejiang</li></region><settlement><li>Hangzhou</li></settlement></list><tree><noCountry><name sortKey="Dai, Lunjin" sort="Dai, Lunjin" uniqKey="Dai L" first="Lunjin" last="Dai">Lunjin Dai</name><name sortKey="Deng, Gang" sort="Deng, Gang" uniqKey="Deng G" first="Gang" last="Deng">Gang Deng</name><name sortKey="Liao, Yiwen" sort="Liao, Yiwen" uniqKey="Liao Y" first="Yiwen" last="Liao">Yiwen Liao</name><name sortKey="Liu, Lijun" sort="Liu, Lijun" uniqKey="Liu L" first="Lijun" last="Liu">Lijun Liu</name><name sortKey="Peng, Dingxiang" sort="Peng, Dingxiang" uniqKey="Peng D" first="Dingxiang" last="Peng">Dingxiang Peng</name><name sortKey="Wang, Bo" sort="Wang, Bo" uniqKey="Wang B" first="Bo" last="Wang">Bo Wang</name><name sortKey="Zhang, Jingyu" sort="Zhang, Jingyu" uniqKey="Zhang J" first="Jingyu" last="Zhang">Jingyu Zhang</name></noCountry><country name="République populaire de Chine"><region name="Zhejiang"><name sortKey="An, Xia" sort="An, Xia" uniqKey="An X" first="Xia" last="An">Xia An</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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